Detailed information of SNP:
|
SNP ID:
sf0714248766(Gbrowse)
Chromosome: chr07 Position: 14248766 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 81.80% | 18.20% |
| All Indica | 776 | 81.83% | 18.17% |
| All Japonica | 481 | 80.25% | 19.75% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 364 | 84.62% | 15.38% |
| Indica II | 204 | 81.37% | 18.63% |
| Indica Intermediate | 208 | 77.40% | 22.60% |
| Temperate Japonica | 324 | 75.31% | 24.69% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714248766 | G->A | LOC_Os07g25010(LOC_Os07g25010.1) | INTRON |