Detailed information of SNP:
|
SNP ID:
sf0714249063(Gbrowse)
Chromosome: chr07 Position: 14249063 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 81.55% | 18.45% |
| All Indica | 770 | 89.22% | 10.78% |
| All Japonica | 476 | 67.86% | 32.14% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 94.04% | 5.96% |
| Indica II | 200 | 77.50% | 22.50% |
| Indica Intermediate | 201 | 92.04% | 7.96% |
| Temperate Japonica | 320 | 61.56% | 38.44% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714249063 | G->A | LOC_Os07g25010(LOC_Os07g25010.1) | Synonymous |