Detailed information of SNP:
|
SNP ID:
sf0714250125(Gbrowse)
Chromosome: chr07 Position: 14250125 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 81.41% | 18.59% |
| All Indica | 776 | 68.56% | 31.44% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 368 | 75.27% | 24.73% |
| Indica II | 203 | 62.07% | 37.93% |
| Indica Intermediate | 205 | 62.93% | 37.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714250125 | C->G | LOC_Os07g25010(LOC_Os07g25010.1) | Non-Synonymous SNP |