Detailed information of SNP:
|
SNP ID:
sf0714250452(Gbrowse)
Chromosome: chr07 Position: 14250452 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 75.56% | 24.44% |
| All Indica | 775 | 64.39% | 35.61% |
| All Japonica | 490 | 89.59% | 10.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 365 | 69.59% | 30.41% |
| Indica II | 206 | 59.22% | 40.78% |
| Indica Intermediate | 204 | 60.29% | 39.71% |
| Temperate Japonica | 329 | 91.49% | 8.51% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714250452 | A->G | LOC_Os07g25010(LOC_Os07g25010.1) | Synonymous |