Detailed information of SNP:
|
SNP ID:
sf0714250803(Gbrowse)
Chromosome: chr07 Position: 14250803 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 88.97% | 11.03% |
| All Indica | 758 | 83.64% | 16.36% |
| All Japonica | 489 | 95.71% | 4.29% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 362 | 87.02% | 12.98% |
| Indica II | 201 | 80.60% | 19.40% |
| Indica Intermediate | 195 | 80.51% | 19.49% |
| Temperate Japonica | 331 | 96.37% | 3.63% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714250803 | G->A | LOC_Os07g25010(LOC_Os07g25010.1) | Synonymous |