Detailed information of SNP:
|
SNP ID:
sf0714250805(Gbrowse)
Chromosome: chr07 Position: 14250805 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 89.14% | 10.86% |
| All Indica | 760 | 84.08% | 15.92% |
| All Japonica | 490 | 95.51% | 4.49% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 362 | 87.29% | 12.71% |
| Indica II | 201 | 80.60% | 19.40% |
| Indica Intermediate | 197 | 81.73% | 18.27% |
| Temperate Japonica | 332 | 96.39% | 3.61% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714250805 | G->A | LOC_Os07g25010(LOC_Os07g25010.1) | Non-Synonymous SNP |