Detailed information of SNP:
|
SNP ID:
sf0714251098(Gbrowse)
Chromosome: chr07 Position: 14251098 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 85.79% | 14.21% |
| All Indica | 741 | 75.30% | 24.70% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 83.62% | 16.38% |
| Indica II | 192 | 60.94% | 39.06% |
| Indica Intermediate | 195 | 74.36% | 25.64% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714251098 | G->A | LOC_Os07g25010(LOC_Os07g25010.1) | INTRON |