Detailed information of SNP:
|
SNP ID:
sf0714251152(Gbrowse)
Chromosome: chr07 Position: 14251152 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 93.29% | 6.71% |
| All Indica | 769 | 89.08% | 10.92% |
| All Japonica | 494 | 98.58% | 1.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 91.97% | 8.03% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 202 | 87.13% | 12.87% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714251152 | A->G | LOC_Os07g25010(LOC_Os07g25010.1) | INTRON |