Detailed information of SNP:
|
SNP ID:
sf0714251454(Gbrowse)
Chromosome: chr07 Position: 14251454 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 96.99% | 3.01% |
| All Indica | 782 | 97.19% | 2.81% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 367 | 97.28% | 2.72% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714251454 | G->A | LOC_Os07g25010(LOC_Os07g25010.1) | SNPs that introduce stop codons |