Detailed information of SNP:
|
SNP ID:
sf0714300124(Gbrowse)
Chromosome: chr07 Position: 14300124 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 66.31% | 33.69% |
| All Indica | 781 | 88.60% | 11.40% |
| All Japonica | 490 | 30.00% | 70.00% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 365 | 86.30% | 13.70% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 330 | 33.64% | 66.36% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714300124 | C->A | INTERGENIC | None |