Detailed information of SNP:
|
SNP ID:
sf0714324101(Gbrowse)
Chromosome: chr07 Position: 14324101 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 51.36% | 48.64% |
| All Indica | 734 | 19.21% | 80.79% |
| All Japonica | 491 | 98.57% | 1.43% |
| Aus | 56 | 60.71% | 39.29% |
| Indica I | 341 | 17.60% | 82.40% |
| Indica II | 197 | 18.78% | 81.22% |
| Indica Intermediate | 196 | 22.45% | 77.55% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 4 | 50.00% | 50.00% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714324101 | G->A | INTERGENIC | None |