Detailed information of SNP:
|
SNP ID:
sf0714327694(Gbrowse)
Chromosome: chr07 Position: 14327694 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 65.12% | 34.88% |
| All Indica | 776 | 93.43% | 6.57% |
| All Japonica | 484 | 14.26% | 85.74% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 92.58% | 7.42% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 329 | 11.85% | 88.15% |
| Tropical Japonica | 89 | 12.36% | 87.64% |
| Japonica Intermediate | 66 | 28.79% | 71.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714327694 | T->G | LOC_Os07g25090(LOC_Os07g25090.1) | Synonymous |