Detailed information of SNP:
|
SNP ID:
sf0714341446(Gbrowse)
Chromosome: chr07 Position: 14341446 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 51.36% | 48.64% |
| All Indica | 780 | 23.72% | 76.28% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 363 | 25.62% | 74.38% |
| Indica II | 212 | 15.09% | 84.91% |
| Indica Intermediate | 205 | 29.27% | 70.73% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714341446 | T->G | INTERGENIC | None |