Detailed information of SNP:
|
SNP ID:
sf0714343933(Gbrowse)
Chromosome: chr07 Position: 14343933 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 56.56% | 43.44% |
| All Indica | 757 | 86.79% | 13.21% |
| All Japonica | 477 | 6.50% | 93.50% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 358 | 86.31% | 13.69% |
| Indica II | 197 | 89.34% | 10.66% |
| Indica Intermediate | 202 | 85.15% | 14.85% |
| Temperate Japonica | 323 | 6.81% | 93.19% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 60 | 11.67% | 88.33% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714343933 | A->G | LOC_Os07g25110(LOC_Os07g25110.1) | INTRON |