Detailed information of SNP:
|
SNP ID:
sf0714359097(Gbrowse)
Chromosome: chr07 Position: 14359097 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 93.76% | 6.24% |
| All Indica | 775 | 89.94% | 10.06% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 87.64% | 12.36% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 83.42% | 16.58% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714359097 | C->T | LOC_Os07g25130(LOC_Os07g25130.1) | Non-Synonymous SNP |