Detailed information of SNP:
|
SNP ID:
sf0714369359(Gbrowse)
Chromosome: chr07 Position: 14369359 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 50.87% | 49.13% |
| All Indica | 774 | 78.29% | 21.71% |
| All Japonica | 492 | 7.52% | 92.48% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 367 | 81.20% | 18.80% |
| Indica II | 206 | 78.64% | 21.36% |
| Indica Intermediate | 201 | 72.64% | 27.36% |
| Temperate Japonica | 331 | 9.06% | 90.94% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714369359 | T->C | LOC_Os07g25150(LOC_Os07g25150.1) | Non-Synonymous SNP |