Detailed information of SNP:
|
SNP ID:
sf0714378554(Gbrowse)
Chromosome: chr07 Position: 14378554 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 96.73% | 3.27% |
| All Indica | 786 | 94.53% | 5.47% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714378554 | C->A | LOC_Os07g25160(LOC_Os07g25160.1) | Synonymous |