Detailed information of SNP:
|
SNP ID:
sf0714388502(Gbrowse)
Chromosome: chr07 Position: 14388502 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 96.23% | 3.77% |
| All Indica | 788 | 94.16% | 5.84% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714388502 | A->G | LOC_Os07g25190(LOC_Os07g25190.1) | INTRON |