Detailed information of SNP:
|
SNP ID:
sf0714389913(Gbrowse)
Chromosome: chr07 Position: 14389913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1297 | 89.13% | 10.87% |
| All Indica | 696 | 82.04% | 17.96% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 53 | 77.36% | 22.64% |
| Indica I | 330 | 79.70% | 20.30% |
| Indica II | 183 | 85.79% | 14.21% |
| Indica Intermediate | 183 | 82.51% | 17.49% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714389913 | G->A | LOC_Os07g25190(LOC_Os07g25190.1) | Synonymous |