Detailed information of SNP:
|
SNP ID:
sf0714391524(Gbrowse)
Chromosome: chr07 Position: 14391524 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 93.53% | 6.47% |
| All Indica | 752 | 91.49% | 8.51% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 60 | 80.00% | 20.00% |
| Indica I | 354 | 95.20% | 4.80% |
| Indica II | 204 | 88.73% | 11.27% |
| Indica Intermediate | 194 | 87.63% | 12.37% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714391524 | T->C | LOC_Os07g25190(LOC_Os07g25190.1) | Synonymous |