Detailed information of SNP:
|
SNP ID:
sf0714394082(Gbrowse)
Chromosome: chr07 Position: 14394082 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 92.29% | 7.71% |
| All Indica | 786 | 96.18% | 3.82% |
| All Japonica | 480 | 84.17% | 15.83% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 97.28% | 2.72% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 320 | 76.56% | 23.44% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714394082 | A->T | LOC_Os07g25190(LOC_Os07g25190.1) | Synonymous |