Detailed information of SNP:
|
SNP ID:
sf0714403547(Gbrowse)
Chromosome: chr07 Position: 14403547 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 94.90% | 5.10% |
| All Indica | 781 | 92.96% | 7.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 60 | 80.00% | 20.00% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 202 | 91.09% | 8.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714403547 | G->A | LOC_Os07g25210(LOC_Os07g25210.1) | Non-Synonymous SNP |