Detailed information of SNP:
|
SNP ID:
sf0714404511(Gbrowse)
Chromosome: chr07 Position: 14404511 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 82.96% | 17.04% |
| All Indica | 727 | 75.52% | 24.48% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 349 | 81.09% | 18.91% |
| Indica II | 185 | 68.65% | 31.35% |
| Indica Intermediate | 193 | 72.02% | 27.98% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714404511 | C->T | LOC_Os07g25210(LOC_Os07g25210.1) | Non-Synonymous SNP |