Detailed information of SNP:
|
SNP ID:
sf0714404950(Gbrowse)
Chromosome: chr07 Position: 14404950 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 57.37% | 42.63% |
| All Indica | 720 | 29.58% | 70.42% |
| All Japonica | 490 | 98.37% | 1.63% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 337 | 33.83% | 66.17% |
| Indica II | 195 | 23.59% | 76.41% |
| Indica Intermediate | 188 | 28.19% | 71.81% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714404950 | G->A | LOC_Os07g25210(LOC_Os07g25210.1) | Synonymous |