Detailed information of SNP:
|
SNP ID:
sf0714417402(Gbrowse)
Chromosome: chr07 Position: 14417402 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 66.07% | 33.93% |
| All Indica | 736 | 45.11% | 54.89% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 62 | 35.48% | 64.52% |
| Indica I | 343 | 53.35% | 46.65% |
| Indica II | 197 | 31.98% | 68.02% |
| Indica Intermediate | 196 | 43.88% | 56.12% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714417402 | G->A | INTERGENIC | None |