Detailed information of SNP:
|
SNP ID:
sf0714430049(Gbrowse)
Chromosome: chr07 Position: 14430049 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1319 | 54.59% | 45.41% |
| All Indica | 739 | 33.96% | 66.04% |
| All Japonica | 468 | 87.82% | 12.18% |
| Aus | 60 | 35.00% | 65.00% |
| Indica I | 340 | 40.59% | 59.41% |
| Indica II | 203 | 27.09% | 72.91% |
| Indica Intermediate | 196 | 29.59% | 70.41% |
| Temperate Japonica | 313 | 90.42% | 9.58% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 62 | 64.52% | 35.48% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714430049 | T->G | LOC_Os07g25260(LOC_Os07g25260.1) | Non-Synonymous SNP |