Detailed information of SNP:
|
SNP ID:
sf0714434998(Gbrowse)
Chromosome: chr07 Position: 14434998 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 92.47% | 7.53% |
| All Indica | 737 | 88.74% | 11.26% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 340 | 97.06% | 2.94% |
| Indica II | 198 | 75.76% | 24.24% |
| Indica Intermediate | 199 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714434998 | C->T | LOC_Os07g25270(LOC_Os07g25270.1) | Synonymous |