Detailed information of SNP:
|
SNP ID:
sf0714436372(Gbrowse)
Chromosome: chr07 Position: 14436372 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 63.41% | 36.59% |
| All Indica | 746 | 79.49% | 20.51% |
| All Japonica | 485 | 38.56% | 61.44% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 347 | 76.66% | 23.34% |
| Indica II | 204 | 86.27% | 13.73% |
| Indica Intermediate | 195 | 77.44% | 22.56% |
| Temperate Japonica | 331 | 44.71% | 55.29% |
| Tropical Japonica | 92 | 9.78% | 90.22% |
| Japonica Intermediate | 62 | 48.39% | 51.61% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714436372 | G->C | LOC_Os07g25270(LOC_Os07g25270.1) | INTRON |