Detailed information of SNP:
|
SNP ID:
sf0714469507(Gbrowse)
Chromosome: chr07 Position: 14469507 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 95.25% | 4.75% |
| All Indica | 739 | 94.32% | 5.68% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 59 | 79.66% | 20.34% |
| Indica I | 348 | 93.68% | 6.32% |
| Indica II | 201 | 94.53% | 5.47% |
| Indica Intermediate | 190 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714469507 | G->A | LOC_Os07g25330(LOC_Os07g25330.1) | Synonymous |