Detailed information of SNP:
|
SNP ID:
sf0714469583(Gbrowse)
Chromosome: chr07 Position: 14469583 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 97.93% | 2.07% |
| All Indica | 781 | 96.93% | 3.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 368 | 96.74% | 3.26% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714469583 | G->A | LOC_Os07g25330(LOC_Os07g25330.1) | Non-Synonymous SNP |