Detailed information of SNP:
|
SNP ID:
sf0714469594(Gbrowse)
Chromosome: chr07 Position: 14469594 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 96.14% | 3.86% |
| All Indica | 780 | 93.72% | 6.28% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 93.72% | 6.28% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714469594 | C->A | LOC_Os07g25330(LOC_Os07g25330.1) | Synonymous |