Detailed information of SNP:
|
SNP ID:
sf0714470643(Gbrowse)
Chromosome: chr07 Position: 14470643 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 95.72% | 4.28% |
| All Indica | 787 | 94.16% | 5.84% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714470643 | T->C | LOC_Os07g25330(LOC_Os07g25330.1) | INTRON |