Detailed information of SNP:
|
SNP ID:
sf0714472090(Gbrowse)
Chromosome: chr07 Position: 14472090 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.04% | 3.96% |
| All Indica | 771 | 93.13% | 6.87% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 90.83% | 9.17% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714472090 | C->T | INTERGENIC | None |