Detailed information of SNP:
|
SNP ID:
sf0714474272(Gbrowse)
Chromosome: chr07 Position: 14474272 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 97.98% | 2.02% |
| All Indica | 767 | 96.48% | 3.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 99.19% | 0.81% |
| Indica II | 194 | 93.81% | 6.19% |
| Indica Intermediate | 203 | 94.09% | 5.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714474272 | G->A | LOC_Os07g25340(LOC_Os07g25340.1) | Synonymous |