Detailed information of SNP:
|
SNP ID:
sf0714476075(Gbrowse)
Chromosome: chr07 Position: 14476075 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 75.33% | 24.67% |
| All Indica | 741 | 58.43% | 41.57% |
| All Japonica | 482 | 98.13% | 1.87% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 344 | 31.69% | 68.31% |
| Indica II | 203 | 84.24% | 15.76% |
| Indica Intermediate | 194 | 78.87% | 21.13% |
| Temperate Japonica | 321 | 97.82% | 2.18% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714476075 | G->A | LOC_Os07g25340(LOC_Os07g25340.1) | Synonymous |