Detailed information of SNP:
|
SNP ID:
sf0714476806(Gbrowse)
Chromosome: chr07 Position: 14476806 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 59.36% | 40.64% |
| All Indica | 778 | 39.20% | 60.80% |
| All Japonica | 471 | 87.90% | 12.10% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 368 | 14.67% | 85.33% |
| Indica II | 208 | 64.90% | 35.10% |
| Indica Intermediate | 202 | 57.43% | 42.57% |
| Temperate Japonica | 316 | 86.71% | 13.29% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 62 | 77.42% | 22.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714476806 | C->T | LOC_Os07g25340(LOC_Os07g25340.1) | Non-Synonymous SNP |