Detailed information of SNP:
|
SNP ID:
sf0714478076(Gbrowse)
Chromosome: chr07 Position: 14478076 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1281 | 61.90% | 38.10% |
| All Indica | 727 | 79.92% | 20.08% |
| All Japonica | 441 | 30.84% | 69.16% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 334 | 76.05% | 23.95% |
| Indica II | 196 | 82.14% | 17.86% |
| Indica Intermediate | 197 | 84.26% | 15.74% |
| Temperate Japonica | 295 | 36.95% | 63.05% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 53 | 45.28% | 54.72% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714478076 | A->G | LOC_Os07g25340(LOC_Os07g25340.1) | Synonymous |