Detailed information of SNP:



SNP ID: sf0714478076(Gbrowse)

Chromosome: chr07

Position: 14478076
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1281 61.90% 38.10%
All Indica727 79.92% 20.08%
All Japonica441 30.84% 69.16%
Aus62 80.65% 19.35%
Indica I334 76.05% 23.95%
Indica II196 82.14% 17.86%
Indica Intermediate197 84.26% 15.74%
Temperate Japonica295 36.95% 63.05%
Tropical Japonica93 3.23% 96.77%
Japonica Intermediate53 45.28% 54.72%
Group VI/Aromatic14 7.14% 92.86%
Intermediate37 67.57% 32.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0714478076 A->G LOC_Os07g25340(LOC_Os07g25340.1) Synonymous