Detailed information of SNP:
|
SNP ID:
sf0714479552(Gbrowse)
Chromosome: chr07 Position: 14479552 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1301 | 51.58% | 48.42% |
| All Indica | 710 | 73.80% | 26.20% |
| All Japonica | 475 | 16.63% | 83.37% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 313 | 63.58% | 36.42% |
| Indica II | 200 | 80.00% | 20.00% |
| Indica Intermediate | 197 | 83.76% | 16.24% |
| Temperate Japonica | 319 | 16.61% | 83.39% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 63 | 36.51% | 63.49% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714479552 | C->T | LOC_Os07g25340(LOC_Os07g25340.1) | Synonymous |