Detailed information of SNP:
|
SNP ID:
sf0714479585(Gbrowse)
Chromosome: chr07 Position: 14479585 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 77.67% | 22.33% |
| All Indica | 781 | 65.30% | 34.70% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 367 | 82.83% | 17.17% |
| Indica II | 210 | 57.62% | 42.38% |
| Indica Intermediate | 204 | 41.67% | 58.33% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714479585 | A->G | LOC_Os07g25340(LOC_Os07g25340.1) | Synonymous |