Detailed information of SNP:
|
SNP ID:
sf0714510680(Gbrowse)
Chromosome: chr07 Position: 14510680 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.59% | 29.41% |
| All Indica | 799 | 53.07% | 46.93% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714510680 | A->G | LOC_Os07g25390(LOC_Os07g25390.1) | INTRON |