Detailed information of SNP:
|
SNP ID:
sf0714522539(Gbrowse)
Chromosome: chr07 Position: 14522539 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 68.47% | 31.53% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 492 | 24.19% | 75.81% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 330 | 31.82% | 68.18% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714522539 | A->T | LOC_Os07g25410(LOC_Os07g25410.1) | INTRON |