Detailed information of SNP:
|
SNP ID:
sf0714525307(Gbrowse)
Chromosome: chr07 Position: 14525307 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 97.21% | 2.79% |
| All Indica | 752 | 96.14% | 3.86% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 60 | 88.33% | 11.67% |
| Indica I | 353 | 92.92% | 7.08% |
| Indica II | 200 | 99.00% | 1.00% |
| Indica Intermediate | 199 | 98.99% | 1.01% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714525307 | C->T | INTERGENIC | None |