Detailed information of SNP:
|
SNP ID:
sf0714593900(Gbrowse)
Chromosome: chr07 Position: 14593900 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.71% | 35.29% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 496 | 13.51% | 86.49% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 17.91% | 82.09% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714593900 | G->A | INTERGENIC | None |