Detailed information of SNP:
|
SNP ID:
sf0714621957(Gbrowse)
Chromosome: chr07 Position: 14621957 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 98.18% | 1.82% |
| All Indica | 758 | 96.70% | 3.30% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 95.58% | 4.42% |
| Indica II | 190 | 99.47% | 0.53% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714621957 | T->C | INTERGENIC | None |