Detailed information of SNP:
|
SNP ID:
sf0714632843(Gbrowse)
Chromosome: chr07 Position: 14632843 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 65.94% | 34.06% |
| All Indica | 797 | 96.74% | 3.26% |
| All Japonica | 496 | 13.71% | 86.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 334 | 17.66% | 82.34% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714632843 | T->C | INTERGENIC | None |