Detailed information of SNP:
|
SNP ID:
sf0714684752(Gbrowse)
Chromosome: chr07 Position: 14684752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.04% | 10.96% |
| All Indica | 795 | 82.14% | 17.86% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714684752 | C->T | LOC_Os07g25620(LOC_Os07g25620.1) | INTRON |