Detailed information of SNP:
|
SNP ID:
sf0714687585(Gbrowse)
Chromosome: chr07 Position: 14687585 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 54.95% | 45.05% |
| All Indica | 794 | 87.15% | 12.85% |
| All Japonica | 487 | 1.03% | 98.97% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 372 | 86.56% | 13.44% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 329 | 0.61% | 99.39% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714687585 | G->A | INTERGENIC | None |