Detailed information of SNP:
|
SNP ID:
sf0714701178(Gbrowse)
Chromosome: chr07 Position: 14701178 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 53.71% | 46.29% |
| All Indica | 788 | 87.06% | 12.94% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 64 | 64.06% | 35.94% |
| Indica I | 371 | 88.95% | 11.05% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 208 | 74.52% | 25.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714701178 | C->T | INTERGENIC | None |