Detailed information of SNP:
|
SNP ID:
sf0714712146(Gbrowse)
Chromosome: chr07 Position: 14712146 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 52.59% | 47.41% |
| All Indica | 790 | 83.67% | 16.33% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 367 | 84.74% | 15.26% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714712146 | G->A | LOC_Os07g25660(LOC_Os07g25660.1) | INTRON |