Detailed information of SNP:
|
SNP ID:
sf0714722271(Gbrowse)
Chromosome: chr07 Position: 14722271 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 97.63% | 2.37% |
| All Indica | 787 | 96.44% | 3.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 52 | 96.15% | 3.85% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 200 | 94.50% | 5.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714722271 | C->A | LOC_Os07g25680(LOC_Os07g25680.1) | UTR_5_PRIME |